PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00080.1.p
Common NameMIMGU_mgv1a023570mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 181aa    MW: 19874.1 Da    PI: 9.0008
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY110.11e-34967159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                      ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+vers+edp++v++tYeg+H+h+
  Migut.G00080.1.p  9 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERSSEDPSIVVTTYEGTHTHP 67
                      59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-34269IPR003657WRKY domain
SuperFamilySSF1182905.36E-30369IPR003657WRKY domain
PROSITE profilePS5081132.087469IPR003657WRKY domain
SMARTSM007741.5E-40968IPR003657WRKY domain
PfamPF031065.1E-281067IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTKSEVDHLD DGYRWRKYGQ KAVKNSPFPR SYYRCTSTAC GVKKRVERSS EDPSIVVTTY  60
EGTHTHPSPI TPRGTSFGGV LPETASLIGG GGGGGGGSSL FVMPQIMNSY RQQTQQQPYN  120
IFQNYLAPPL MVSSFGTSSN TFQERRFRPY ASSSSSSSAR DHGLLQDMLP SEMLKELNEE  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-302691077Probable WRKY transcription factor 4
2lex_A4e-302691077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846599.11e-133PREDICTED: probable WRKY transcription factor 48, partial
SwissprotQ9FGZ45e-49WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A022QP081e-133A0A022QP08_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000298121e-58(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-49WRKY DNA-binding protein 48